Nos tutelles
Publications 2014
Afolabi O, Milan B, Amoussa R, Koebnik R, Poulin L, Szurek B , Habarugira G, Bigirimana J, Silué D. (2014). First report of Xanthomonas oryzae pv.oryzicola causing bacterial leaf streak of rice in Burundi. Plant Disease. 98(10): 1426.
Afolabi O, Milan B, Poulin L , Ongom J, Szurek B, Koebnik R, Silué D. (2014). First report of Xanthomonas oryzaepv.oryzicolacausing bacterial leaf streak of rice in Uganda. Plant Disease.98(11): 1579.
Ali N, Chapuis E , Tavoillot J, Mateille T. (2014). Plant-parasitic nematodes associated with olive tree (Olea europaeaL.) with a focus on the Mediterranean Basin: a review. Comptes Rendus Biologies. 337: 423-442.
Ash G, Lang J, Triplett L, Stodart B, Verdier V , Vera Cruz C, P, Leach JE. (2014). Development of a genomics-based LAMP (Loop-mediated isothermal amplification) assay for detection of Pseudomonas fuscovaginae from rice. Plant Disease. 98 (7): 909-915.
Bahar O, Pruitt R, Luu DD, Schwessinger B, Daudi A, Liu F, Ruan R, Fontaine-Bodin L, Koebnik R , Ronald P. (2014). The Xanthomonas Ax21 protein is processed by the general secretory system and is secreted in association with outer membrane vesicles. PeerJ. 2014 Jan 7;2:e242. doi: 10.7717/peerj.242. eCollection 2014.
Besnard G, Juhling F, Chapuis E , Zedane L, Lhuillier E, Mateille T, Bellafiore S. (2014). Fast assembly of the mitochondrial genome of a plant parasitic nematode (Meloidogyne graminicola) using next generation sequencing. Comptes Rendus Biologies,337: 295-301.
Cabasan, M, Kumar, A, Bellafiore S , De Waele D. (2014). Histopathology of the rice root-knot nematode Meloidogyne graminicola on Oryza sativa and O. glaberrima. Nematology. 16: 73–81.
Chen J, Fernandez D , Wang DD, Chen YJ, Dai G. (2014). Biological control mechanisms of D-pinitol against powdery mildew disease in cucumber. Physiological and Molecular Plant Pathology. 88: 52-60.
Coudert Y, Le VA, Adam H, Bès M, Vignols F , Jouannic S, Guiderdoni E, Gantet P.( 2014). Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of post-embryonic root formation. New Phytol. doi: 10.1111/nph.13196.
Couturier J, Wu HC, Dhalleine T, Pégeot H, Sudre D, Gualberto JM, Jacquot JP, Gaymard F, Vignols F , Rouhier N. (2014). Monothiol Glutaredoxin-BolA Interactions: Redox Control of Arabidopsis thaliana BolA2 and SufE1. Molecular Plant Pathology. 1:187-205
Denancé N, Szurek B , Noël LD. (2014). Emerging functions of nodulin-like proteins in non-nodulating plant species. Plant Cell Physiology. 55(3): 469-474
Denoeud F, Carretero-Paulet L, Dereeper A , Droc G, Guyot R , Pietrella M, Zheng C, Alberti A,Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C , Cenci A, Combes MC, Crouzillat D, Da Silva C, Daddiego L, De Bellis F, Dussert S, Garsmeur O, Gayraud T, Guignon V, Jahn K, Jamilloux V, Joët T, Labadie K, Lan T, Leclercq J, Lepelley M, Leroy T, Li LT, Librado P, Lopez L, Muñoz A, Noel B, Pallavicini A, Perrotta G, Poncet V, Pot D, Priyono, Rigoreau M, Rouard M, Rozas J, Tranchant-Dubreuil C, VanBuren R, Zhang Q, Andrade AC, Argout X, Bertrand B , de Kochko A, Graziosi G, Henry RJ, Jayarama, Ming R, Nagai C, Rounsley S, Sankoff D, Giuliano G, Albert VA, Wincker P, Lashermes P. (2014). The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science. 345:1181-1184.
Dereeper A , Bocs S, Rouard M, Guignon V, Ravel S, Tranchant-Dubreuil C, Poncet V, Garsmeur O, Lashermes P, Droc G. (2014). The coffee genome hub: a resource for coffee genomes. Nucleic Acids Research. Jan 28;43 (Database issue):D1028-35. doi: 10.1093/nar/gku1108. Epub 2014 Nov.
Freitas VM, Correa VR, Motta FC, Sousa MG, Gomes ACMM, Carneiro MDG, Silva DB, Mattos JK, Nicole M, Carneiro RMDG. (2014). Resistant accessions of wild Psidium spp. to Meloidogyne enterolobii and histological characterization of resistance. Plant Pathology. 63(4): 738-746
Gagnevin L , Bolot S, Gordon JL, Pruvost O, Vernière C, Robène I, Arlat M, Noël LD, Carrère S, Jacques MA, Koebnik R. (2014). Draft genome sequence of Xanthomonas axonopodis pv. alliistrain CFBP 6369. Genome Announc. 2014 Jul 31;2(4). pii: e00727-14. doi: 10.1128/genomeA.00727-14.
Harrison N, Davis RE, Oropeza C, Helmick EE, Narvaez M, Eden-Green S, Dollet M , Dickinson M. (2014). "Candidatus Phytoplasma palmicola", associated with a lethal yellowing-type disease of coconut (Cocos nucifera L.) in Mozambique. International Journal of systematic and evolutionary microbiology. 64: 1890-1899.
Indiana A, Briand M, Arlat M, Gagnevin L , Koebnik R , Noel LD, Portier P, Darrasse A, Jacques MA. (2014). Draft genome sequence of the flagellated Xanthomonas fuscanssub sp. fuscans strain CFBP 4884. Genome Announc. Sep 25;2(5). pii: e00966-14. doi: 10.1128/genomeA.00966-14.
Joët T, Laffargue A, Salmona J, Doulbeau S, Descroix F, Bertrand B , Lashermes P, Dussert S. (2014). Regulation of galactomannan biosynthesis in coffee seeds. Journal of Experimental Botany. 65 : 323-337.
Kyndt T., Fernandez D, Gheysen G. (2014). Plant-parasitic nematode infections in rice: molecular and cellular insights. Annual Review of Phytopathology. 52:135-153.
Lang J, Langlois P, Nguyen MH, Triplett L, Purdie L, Holton TA, Djikeng A, Vera Cruz C, Verdier V , Leach JE. (2014). Sensitive detection of Xanthomonas oryzae pathovars oryzae and oryzicola by loop-mediated isothermal amplification Applied and Environmental Microbiology. 80(15): 4519-4530.
Lashermes P, Combes MC, Hueber Y, Severac D, Dereeper A. (2014). Genome rearrangements derived from homoeologous recombination following allopolyploidy speciation in coffee. Plant Journal. 78: 674–685
Le Roux C, Muller F, Bouvet JM, Dreyfus B, Béna G , Galiana A, Bâ AM. (2014). Genetic diversity patterns and functional traits of Bradyrhizobium strains associated with Pterocarpus officinalis Jacq. in Caribbean islands and Amazonian forest (French Guiana). Microbial Ecology. 68: 329-338.
Longue DRS, Galzi A , Semballa S, Zinga I, Fargette D , Traoré O. (2014). First report ofRice yellow mottle virusin rice in Central African Republic. Plant Disease. 98(1): 162.
Melkonian R, Moulin L, Béna G, Tisseyre P, Chaintreuil C, Heulin K, Rezkallah N, Klonowska A , Gonzalez S, Simon M, Chen WM, James EK, Laguerre G. (2014). The geographical patterns of symbiont diversity in the invasive legume Mimosa pudicacan be explained by the competitiveness of its symbionts and by the host genotype. EnvironmentalMicrobiology. 16(7): 2099-2111
Mensi I, Vernerey MS, Gargani D, Nicole M , Rott P. (2014). Breaking dogmas: The plant vascular pathogen Xanthomonas albilineansis able to invade non-vascular tissues despite its reduced genome. Open Biology. 4:130116. http://dx.doi.org/10.1098 /rsob.130116
Moulin L, Klonowska A , Bournaud C, Booth K, Vriezen JAC, Melkonian, James EK, Young JPW, Bena G , Hauser L, Land M, Kyrpides N, Bruce D, Chain P, Copeland A, Pitluck S, Woyke T, Lizotte-Waniewski M, Bristow J, Riley M. (2014). Complete Genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosaspecies. Standard in Genomic Sciences. 9(3): 763-774.
Muñoz-Bodnar A, Perez-Quintero AL, Gomez-Cano F, Gil J, Michelmore R, Bernal A, Szurek B , Lopez C. (2014). RNAseq analysis of cassava reveals similar plant responses upon infection with pathogenic and non-pathogenic strains of Xanthomonas axonopodis pv. manihotis. Plant Cell Reports. 33(11): 1901-1912.
Nguyen PV, Bellafiore S, Petitot AS , Haidar R, Bak A, Abed A, Gantet P, Mezzalira I, Engler JD, Fernandez D. (2014). Meloidogyne incognita- rice (Oryza sativa) interaction: a new model system to study plant–root-knot nematode interactions in monocotyledons. Rice. 7:23.
Perrineau MM, Le Roux C, Galiana A, Faye A, Duponnois R, Goh D, Prin Y, Béna G. (2014). Differing courses of genetic evolution of Bradyrhizobium inoculants as revealed by long-term molecular tracing in Acacia mangium plantations. Applied and Environmental Microbiology. 80: 5709-5716.
Pinel-Galzi A , Traoré O, Séré Y, Hébrard E, Fargette D. (2014). The biogeography of viral emergence: rice yellow mottle virus as a case study. Curr Opin Virol. 10C:7-13. doi: 10.1016/j.coviro.2014.12.002.
Polzin F, Sylvestre I, Déchamp E , Ilbert P, Etienne H , Engelmann F. (2014). Effect of activated charcoal on multiplication of African yam (Dioscorea cayenensis-rotundata) nodal segments using a temporary immersion bioreactor (RITA (R)). In vitro cellulare & Developmental Biology Plant. 50(2): 210-216.
Porcel BM, Denoeud F, Opperdoes F, Noel B, Madoui MA, Hammarton TC, Field MC, Da Silva C, Couloux A, Poulain J, Katinka M, Jabbari K, Aury JM, Campbell DA, Cintron R, Dickens NJ, Docampo R, Sturm NR, Koumandou VL, Fabre S , Flegontov P, Lukeš J, Michaeli S, Mottram JC, Szöőr B, Zilberstein D, Bringaud F, Wincker P, Dollet M. (2014). The streamlined genome of Phytomonas spp. relative to humain pathogenic kinetoplastids reveals a parasite tailored for plants. PLoS Genet. 6;10(2):e1004007. doi: 10.1371/journal.pgen.1004007. eCollection 2014 Feb.
Poulicard N, Pinel-Galzi A, Fargette D, Hébrard E. (2014). Alternative mutational pathways, outside the VPg, ofRice yellow mottle virusto overcome eIF(iso)4G-mediated rice resistance under strong genetic constraints. Journal of General Virology. 95: 219-224.
Poulin L , Raveloson H, Sester M, Raboin LM, Silue D, Koebnik R, Szurek B. (2014). Confirmation of bacterial leaf streak caused by Xanthomonas oryzae pv. oryzicola on rice in Madagascar. Plant Disease. 2014, 98 (10), p. 1423-1423.
Pruvost O, Magne M, Boyer K, Leduc A, Tourterel C, Drevet C, Ravigné V, Gagnevin L , Guérin F, Chiroleu F, Koebnik R , Verdier V , Vernière C. (2014). A MLVA genotyping scheme for global surveillance of the citrus pathogen Xanthomonas citri pv.citri suggests a worldwide geographical expansion of a single genetic lineage. PLoS One. 9: e98129.
Rakotomalala M, Abera B, Pinel-Galzi A , Rakotoarisoa J, Alemu D, Fargette D . (2014). First report ofRice yellow mottle virusin rice in Federal Democratic Republic of Ethiopia. Plant Disease. 98: 1449-1450
Riah N, Béna G , Djekoun A, Heulin K, de Lajudie P, Laguerre G. (2014). Genotypic and symbiotic diversity ofRhizobiumpopulations associated with cultivated lentil and pea in sub-humid and semi-arid regions of Eastern Algeria. Systematic Applied Microbiology. 37(5): 368-75.
Richter A, Streubel J, Blucher C, Szurek B , Reschke M, Grau J, Boch J. (2014). A TAL effector repeat architecture for frameshift binding. Nature Communication. Mar 11;5:3447. doi: 10.1038/ncomms4447.
Robin GP, Ortiz E, Szurek B , Brizard JP, Koebnik R .(2014). Comparative proteomics reveal new HrpX-regulated proteins of Xanthomonas oryzae pv.oryzae. Journal of Proteomics. 97: 256-264
Scott SW, Mac-Farlane S, McGavin W, Fargette, D. (2014). Cassava Ivorian bacilliform virus is a member of the genus Anulavirus. Archives of Virology. 159: 2791-2793.
Sérémé D, Lacombe S , Konaté M, Bangratz M, Pinel-Galzi A, Fargette D , Traoré A, Konaté G, Brugidou C. (2014). Sites under positive selection in the RNA silencing modulate the suppressor activity ofRice yellow mottle virus movement protein P1. Journal of General Virology.95: 213-218.
Sérémé D, Neya J, Bangratz M, Brugidou C , Ouedraogo I. (2014). First report of Rice necrosis virus infecting rice in Burkina Faso. Plant Disease. 10: 1451.
Soubeyrand S, Tollenaere C , Haon-Lasportes E, Laine AL . (2014). Regression-Based Ranking of Pathogen Strains with Respect to Their Contribution to Natural Epidemics. PLoS One. 31;9(1): e86591. doi: 10.1371/journal.pone.0086591. eCollection 2014.
Talhinhas P, Azinheira HG, Vieira B, Loureiro A, Tavares S, Batista D, Morin E, Petitot AS , Paulo OS, Poulain J, Da Silva C, Duplessis S, Silva MD, Fernandez D . (2014). Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection. Frontiers in Plant Science, 14(5):88. doi: 10.3389/fpls.2014.00088. eCollection 2014.
Tollenaere C , Pernechele B, Mäkinen HS, Parratt SR, Németh MZ, Kovács GM, Kiss L, Tack AJ, Laine AL. (2014). A hyperparasite affects the population dynamics of a wild plant pathogen. Mol Ecol. 23(23): 5877-5887.
Trujillo CA, Arias-Rojas N, Poulin L , Medina CA, Tapiero A, Restrepo S, Koebnik R , Bernal AJ. (2014). Population typing of the causal agent of cassava bacterial blight in the Eastern Plains of Colombia using two types of molecular markers. BMC Microbiology. 14: 161. doi: 10.1186/1471-2180-14-161
Wonni I , Cottyn B, Detemmerman L, Dao S, Ouedraogo L, Sarra S, Tekete C , Poussier S, Corral R, Triplett L, Koita O, Koebnik R , Leach J, Szurek B , Maes M, Verdier V . (2014). Analysis ofXanthomonas oryzae pv.oryzicola population in Mali and Burkina Faso reveals a high level of genetic and pathogenic diversity. Phytopathology.104(5): 520-531.
