Nos tutelles
Publications 2018
Adego AK, Poulicard N, Pinel-Galzi A , Mukoye B, Fargette D, Were HK, Hebrard E . (2018). Full-Length Genome Sequences of Recombinant and Nonrecombinant Sympatric Strains of Rice yellow mottle virus from Western Kenya. Genome Announc. DOI: 10.1128/genomeA.01508-17
Alves GSC, Torres LF, de Aquino SO, Reichel T, Freire LP, Vieira NG, Vinecky F, This D, Pot D, Etienne H , Paiva LV, Marraccini P , Andrade AC. (2018). Nucleotide diversity of the coding and promoter regions of DREB1D, a candidate gene for drought tolerance in Coffea species. Trop. Plant Biol. DOI: 10.1007/s12042-018-9199-x
Aribi J , Ribière W, Villain L , Anthony F. (2018) Screening of wild coffee (Coffea spp.) for resistance to Meloidogyne incognita race 1. Nematropica. 48(1): 5-14.
Bartlett CR, Dos Passos EM, Da Silva FG, Diniz LEC, Dollet M . (2018). A new species of Oecleus Stal (Hemiptera: Fulgoroidea: Cixiidae) from coconut in Brazil. Zootaxa. 4472 (2): 358-364. DOI: 10.11646/zootaxa.4472.2.8.
Bezrutczyk M, Yang J, Eom JS, Prior M, Sosso D, Hartwig T, Szurek B , Oliva R, Vera-Cruz C, White FF, Yang B, Frommer WB. (2018). Sugar flux and signaling in plant-microbe interactions.Plant J. 93(4): 675-685. DOI: 10.1111/tpj.13775
Bonato O. , Chadoeuf J. (2018). Arthropods life cycle and temperature: Beyond isomorphy hypothesis. Journal Thermal Biology, https://doi.org/10.1016/j.jtherbio.2018.05.004
Bonel N, Noel E, Janicke T, Sartori K, Chapuis E , Segard A, Meconcelli S, Pelissie B, Sarda V, David P. (2018). Asymmetric evolutionary responses to sex-specific selection in a hermaphrodite. Evolution. 72(10): 2181-2201. DOI: 10.1111/evo.13565
Bossa-Castro A, Tekete C, Raghavan C, Delorean E, Dereeper A , Dagno K, Koita O, Mosquera G, Leung H, Verdier V , Leach J. (2018). Allelic variation for broad-spectrum resistance and susceptibility to bacterial pathogens identified in a rice MAGIC population. Plant Biotechnol J. DOI: 10.1111/pbi.12895
Bossa-Castro AM, Tekete C, Raghavan C, Delorean E, Dereeper A, Verdier VM , Dagno K, Koita O, Mosquera GM, Leung H, Leach JE (2018). Broad-spectrum resistance and susceptibility to bacterial blight and bacterial leaf streak of rice. Phytopathology. 108(10): 172-172, Supplement S. International Congress of Plant Pathology (ICPP), Boston, UL 29-AUG 03, 2018
Bournaud C, James EK, de Faria SM, Lebrun M, Melkonian R, Duponnois R, Tisseyre P, Moulin L , Prin Y. (2018). Interdependency of efficient nodulation and arbuscular mycorrhization in Piptadenia gonoacantha, a Brazilian legume tree; Plant Cell and Environment. 41(9): 2008-2020. DOI: 10.1111/pce.13095.
Breitler JC , Dechamp E, Campa C , Zebral Rodrigues L, Guyot R, Marraccini P, Etienne H. (2018). CRISPR/Cas9-mediated efficient targeted mutagenesis has the potential to accelerate the domestication of Coffea canephora. Plant Cell Tiss Org Cult. doi.org/10.1007/s11240-018-1429-2.
Brottier L, Chaintreuil C, Simion P, Scornavacca C, Rivallan R, Mournet P, Moulin L , Lewis GP, Fardoux J, Brown SC, Gomez-Pacheco M, Bourges M, Hervouet C, Gueye M, Duponnois R, Ramanankierana H, Randriambanona H, Vandrot H, Zabaleta M, DasGupta M, D'Hont A, Giraud E, Arrighi JF. (2018). A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses. BMC Plant Biology. 18. DOI: 10.1186/s12870-018-1567-z
Cabasan MTN, Kumar A, Bellafiore S , De Waele D. (2018). Reproductive, pathogenic and genotypic characterisation of five Meloidogyne graminicola populations from the Philippines on susceptible and resistant rice varieties. Nematology, 2018, 20 (4), p. 299-318. http://dx.doi.org/10.1163/15685411-00003142
Charon J, Barra A, Walter J, Millot P, Hébrard E , Moury B, Michon T. (2018). First experimental assessment of protein intrinsic disorder involvement in an RNA virus natural adaptive process. Molecular Biology and Evolution.35(1) : 38-49. doi.org/10.1093/molbev/msx249
Chen NWG, Serres-Giardi L, Ruh M, Briand M, Bonneau S, Darrasse A, Barbe V, Gagnevin L , Koebnik R , Jacques MA. (2018). Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean. BMC Genomics. 19. DOI: 10.1186/s12864-018-4975-4
Clerissi C, Touchon M, Capela D, Tang MX, Cruveiller S, Parker MA, Moulin L , Masson-Boivin C, Rocha EPC. (2018). Parallels between experimental and natural evolution of legume symbionts. Nature Communications. 9. DOI: 10.1038/s41467-018-04778-5.
Cohen S, Liu H, Verdier VM , Leach JE. (2018). Rice hormone response is involved in the temperature-dependent function of Xa7-mediated bacterial blight resistance. Phytopathology. 108(10): Supplement S. International Congress of Plant Pathology (ICPP), Boston, UL 29-AUG 03, 2018
Cruz CVM, Nguyen MHR, Lang JM, Cottyn B, Verdier VM , Mishra D, Raj Y, Leach JE. (2018). Critical aspects of biologically relevant seed health assays. 108(10): Supplement S. International Congress of Plant Pathology (ICPP), Boston, UL 29-AUG 03, 2018
da Silva Mattos V, Mulet K, Cares JE, Gomes CB, Fernandez D , de Sa MFG, Carneiro RMDG, Castagnone-Sereno P. (2018). Development of Diagnostic SCAR Markers for Meloidogyne graminicola, M. oryzae, and M. salasi Associated with Irrigated Rice Fields in Americas. Plant Dis. DOI: 10.1094/PDIS-12-17-2015-RE
De Aquino Oliveira Sinara, de Araújo Carneiro Fernanda, Silva Rêgo Erica Cristina, Costa Alves Gabriel Sergio, Carvalho Andrade Alan, Marraccini Pierre . (2018). Functional analysis of different promoter haplotypes of the coffee (Coffea canephora) CcDREB1D gene through genetic transformation of Nicotiana tabacum. Plant Cell, Tissue and Organ Culture. 132(2): 279-294.
Dekkiche S, Benguedouar A, Sbabou L, Taha K, Filali-Maltouf A, Béna G . (2018). Chickpea (Cicer arietinum) is nodulated by unexpected wide diversity of Mesorhizobium species in Eastern Algeria. Archives of Agronomy and Soil Science, 2018, 64 (2), p. 285-297. http://dx.doi.org/10.1080/03650340.2017.1346791
Dellicour S, Vrancken B, Trovao NS, Fargette D , Lemey P. (2018). On the importance of negative controls in viral landscape phylogeography. Virus Evol. doi: 10.1093/ve/vey023
De Meyer SE, Cnockaert M, Moulin L , Howieson JG, Vandamme P. (2018). Symbiotic and non-symbiotic Paraburkholderia isolated from South African Lebeckia ambigua root nodules and the description of Paraburkholderia fynbosensis sp. nov. Int J Syst Evol Microbiol. 68(8): 2607-2614. DOI:10.1099/ijsem.0.002884
Denancé N, Szurek B , Doyle EL, Lauver E, Fontaine-Bodin L, Guy E, Hajri A, Cerutti A, Boureau T, Poussier S, Arlat M, Bogdanove AJ, Noel LD. (2018). Two ancestral genes shaped the Xanthomonas campestris TAL effector gene repertoire. New Phytol. DOI: 10.1111/nph.15148
De Sa MG, Petitot AS, De Sa MEL, Mezzalira I, Beneventi MA, Amora DX, Albuquerque EVS, De Sa MFG, Fernandez D. (2018). Functional analysis of the MSP18 root-knot nematode virulence gene in rice. Phytopathology. 108(10): Supplement S. International Congress of Plant Pathology (ICPP), Boston, UL 29-AUG 03, 2018
Doucouré H, Pérez-Quintero AL, Reshetnyak G, Tekete C, Auguy F, Thomas E, Koebnik R, Szurek B, Koita O, Verdier V , Cunnac S. (2018) Functional and Genome Sequence-Driven Characterization of tal Effector Gene Repertoires Reveals Novel Variants With Altered Specificities in Closely Related Malian Xanthomonas oryzae pv. oryzae Strains. Front. Microbiol. 9:1657. doi: 10.3389/fmicb.2018.01657
Dussert S, Serret J, Bastos-Siqueira A, Morcillo F, Dechamps E , Rofidal V, Lashermes P, Etienne H , Joet T. (2018). Integrative analysis of the late maturation programme and desiccation tolerance mechanisms in intermediate coffee seeds. J Exp Bot. DOI: 10.1093/jxb/erx492
Etienne H , Breton D, Breitler JC, Bertrand B, Déchamp E , Awada R, Marraccini P, Léran S , Alpizar E, Campa C , Courtel P, Georget F, Ducos JP (2018). Coffee Somatic Embryogenesis: How Did Research, Experience Gained and Innovations Promote the Commercial Propagation of Elite Clones From the Two Cultivated Species? Frontiers in Plant Science. doi: 10.3389/fpls.2018.01630.
Fernandez D , Hofte M, Huckelhoven R, Reignault P, Sache I, Siah A. (2018). Special issue "Deepen knowledge in plant pathology for innovative agroecology" FOREWORD. European Journal of Plant Pathology. 152(4): 853-854. DOI: 10.1007/s10658-018-01625-7
Fiorilli V, Vannini C, Ortolani F, Garcia-Seco D, Chiapello M, Novero M, Domingo G, Terzi V, Morcia C, Bagnaresi P, Moulin L , Bracale M, Bonfante P. 2018. Omics approaches revealed how arbuscular mycorrhizal symbiosis enhances yield and resistance to leaf pathogen in wheat. Scientific Reports 8(1). DOI:10.1038/s41598-018-27622-8
Garcia-Gonzalez T, Saenz-Hidalgo HK, Silva-Rojas HV, Morales-Nieto C, Vancheva T, Koebnik R , Avila-Quezada GD. (2018). Enterobacter cloacae, an Emerging Plant-Pathogenic Bacterium Affecting Chili Pepper Seedlings. Plant Pathol. J. DOI: 10.5423/PPJ.OA.06.2017.0128
Grynberg P, Petitot AS, Mota A, Togawa R, Fernandez D , Albuquerque EVS. (2018). Towards deciphering host resistance to phytonematodes: Transcriptome analysis of a coffee incompatible response to Meloidogyne incognita. Phytopathology. 108(10): Supplement S. International Congress of Plant Pathology (ICPP), Boston, UL 29-AUG 03, 2018
Habibi P, Soccol CR, O'Keefe BR, Krumpe LRH, Wilson J, de Macedo LLP, Faheem M, Dos Santos VO, Prado GS, Bothelo MA, Lacombe S , Grossi-de-Sa F. (2018). Gene-silencing suppressors for high-level production of the HIV-1 entry inhibitor griffithsin in Nicotiana benthamiana. Process Biochemistry. 70: 45-54. DOI: 10.1016/j.procbio.2018.04.006
Hébrard E, Pinel-Galzi A , Oludare A, Poulicard N, Aribi J, Fabre S , Issaka S, Mariac C, Dereeper A , Albar L, Silué D, Fargette D. (2018). Identification of a hypervirulent pathotype of Rice yellow mottle virus: A threat to genetic resistance deployment in West-Central Africa. Phytopathology. DOI:10.1094/PHYTO-05-17-0190-R
Hily JM, Demaneche S, Poulicard N , Tannieres M, Djennane S, Beuve M, Vigne E, Demangeat G, Komar V, Gertz C, Marmonier A, Hemmer C, Vigneron S, Marais A, Candresse T, Simonet P, Lemaire O. (2018). Metagenomic-based impact study of transgenic grapevine rootstock on its associated virome and soil bacteriome. Plant Biotechnol J. 6(1): 208-220. DOI: 10.1111/pbi.12761
Kante M, Blondin L, Flores CM, Cardenal LYR, Wonni I, Dagno K, Restrepo S, Bernal AJ, Koebnik R, Verdier VM , Koita O, Verniere C, Szurek B . (2018). MLVA-based diversity analysis of Xanthomonas axonopodis pv. manihotis (Xam) populations in Mali. Phytopathology. 108(10): 88-88, Supplement S. International Congress of Plant Pathology (ICPP), Boston, UL 29-AUG 03, 2018
Karim S, McNally RR, Dereeper A , Charkowski AO, Triplett LR. (2018). Automated primer design for DNA-based detection of the emerging potato pathogen Dickeya dianthicola. Phytopathology. 108(10): 72-72, Supplement S. International Congress of Plant Pathology (ICPP), Boston, UL 29-AUG 03, 2018
Klonowska A , Melkonian R, Tisseyre P, Moulin L . (2018). Transcriptomic profiling of Burkholderia phymatum STM815, Cupriavidus taiwanensis LMG19424 and Rhizobium mesoamericanum STM3625 in response to Mimosa pudica root exudates illuminates the molecular basis of their nodulation competitiveness and symbiotic evolutionary history. BMC Genomics. DOI: 10.1186/s12864-018-4487-2
Koala M, Sérémé D, Vignols, F, Lacombe E, Bantgratz M , Neya BJ, Brugidou C, Barro N, Traoré O. (2018) Molecular Variability and Genetic Structure of IYMV in Burkina Faso. American Journal of Plant Sciences. 9(2): 311-324. https://doi.org/10.4236/ajps.2018.92025
Lacombe S, Bangratz M, Brizard JP , Petididier E, Pagniez J, Sereme D, Lemesre JL, Brugidou C . (2018). Optimized transitory ectopic expression of promastigote surface antigen protein in Nicotiana benthamiana, a potential anti-leishmaniasis vaccine candidate. J biosci Bioeng. DOI: 10.1016/j.jbiosc.2017.07.008
Leach JE, Bossa-Castro AM, huerta AI, Delorean E, Raghavan C, Tekete C, Dereeper A, Tonnessen BW, Koita O, Mosquera GM, Leung H, Verdier VM. (2018). Quantitative resistance to bacterial pathogens of rice. 108(10): Supplement S. International Congress of Plant Pathology (ICPP), Boston, UL 29-AUG 03, 2018
Medina CA, Reyes PA, Trujillo CA, Gonzalez JL, Bejarano DA, Montenegro NA, Jacobs JM, Joe A, Restrepo S, Alfano JR, Bernal A. (2018). The role of type III effectors from Xanthomonas axonopodis pv. manihotis in virulence and suppression of plant immunity. Molecular Plant Pathology. 19(3): 593-606. DOI: 10.1111/mpp.12545
Morel A, Guinard J, Lonjon F, Sujeeun L, Barberis P, Genin S, Vailleau F, Daunay MC, Dintinger J, Poussier S, Wicker E. (2018). The eggplant AG91-25 recognizes the Type III-secreted effector RipAX2 to trigger resistance to bacterial wilt (Ralstonia solanacearum species complex). Molecular Plant Pathology. 19(11): 2459-2472. DOI: 10.1111/mpp.12724.
Nakato GV, Wicker E , Coutinho TA, Mahuku G, Studholme DJ. (2018). A highly specific tool for identification of Xanthomonas vasicola pv. musacearum based on five Xvm-specific coding sequences. Heliyon. 27. DOI: 10.1016/j.heliyon.2018.e01080
Narváez M, Vazquez‑Ean R, Harrison NA, Nic‑Matos G, Julia JF, Dzido JL, Fabre S , Dollet M , Oropeza C. (2018). Presence of 16SrIV phytoplasmas of subgroups A, D and E in planthopper Haplaxius crudus Van Duzee insects in Yucatán, Mexico. 3 Biotech. 8(61). DOI: 10.1007/s13205-018-1094-5
Nunes RD, Orozco-Arias S, Crouzillat D, Mueller LA, Strickler SR, Descombes P, Fournier C, Moine D, Kochko de A, Yuyama PM, Vanzela ALL, Guyot R. (2018). Structure and distribution of centromeric retrotransposons at diploid and allotetraploid Coffea centromeric and pericentromeric regions. Frontiers in Plant Science ; 9 :175. doi:10.3389/fpls.2018.00175
Orozco-Arias S, Tabares-Soto R,n Ceballos D, Silva Domingues D, Garavito A, Ming R, Guyot R . (2018). Inpactor, Integrated and Parallel Analyzer and Classifier of LTR Retrotransposons and Its Application for Pineapple LTR Retrotransposons Diversity and Dynamics. Biology (Basel). 25. DOI:10.3390/biology7020032
Osdaghi E, Ansari M, Taghavi SM, Zarei S, Koebnik R , Lamichhane JR. (2018). Pathogenicity and phylogenetic analysis of Clavibacter michiganensis strains associated with tomato plants in Iran. Plant Pahtology. 67: 957-970. Doi: 10.1111/ppa.12801
Osdaghi E, Taghavi SM, Koebnik R , Lamichhane JR. (2018). Multilocus sequence analysis reveals a novel phylogroup of Xanthomonas euvesicatoria pv. perforans causing bacterial spot of tomato in Iran. Plant Pathology. 67(7) : 1601-1611. DOI: 10.1111/ppa.12864
Perez-Quintero AL, Lamy L, Zarate C, Cunnac S , Doyle E, Bogdanove A, Szurek B, Dereeper A. (2018). daTALbase: A Database for Genomic and Transcriptomic Data Related to TAL Effectors. Molecular Plant Microbe Interactions. 31(4): 471-480. DOI: 10.1094/MPMI-06-17-0153-FI
Phan NT, De Waele D, Lorieux M, Xiong LZ, Bellafiore S. (2018). A Hypersensitivity-Like Response to Meloidogyne graminicola in Rice (Oryza sativa). Phytopathology. 108(4): 521-528. DOI: 10.1094/PHYTO-07-17-0235-R
Pinel-Galzi A, Hébrard E , Traoré O, Silué D, Albar L. (2018). Protocol for RYMV Inoculation and Resistance Evaluation in Rice Seedlings. Bio-protocol 8(11): e2863. DOI: 10.21769/BioProtoc.2863. https://bio-protocol.org/e2863
Sant’Ana GC, Pereira LFP, Pot D, Ivamoto ST, Dominguez DS, Ferreira RV, pagiatto NF, da Silva BSR, Nogueira LM, Kitzberger CSG, Scholz MBS, de Oliveira FF, Sera GH, Padilha L, Labouisse JP, Guyot R , Charmetant P, Leroy T. (2018). Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in &ITCoffea arabica&IT L. Scientific Reports. 8. DOI: 10.1038/s41598-017-18800-1
Schandry N, Jacobs JM, Szurek B , Perez-Quintero AL. (2018). A cautionary TALE: how plant breeding may have favoured expanded TALE repertoires in Xanthomonas. Mol Plant Pathol. 19(6): 1297-1301. DOI: 10.1111/mpp.12670
Silva MS, Arraes FBM, Campos MA, Grossi-de-Sa M, Fernandez D, Candido ES, Cardoso MH, Franco OL, Grossi de Sa MF. (2018). Review: Potential biotechnological assets related to plant immunity modulation applicable in engineering disease-resistant crops. Plant Sci. DOI: 10.1016/j.plantsci.2018.02.013
Silva FG, Passos EM, Diniz LEC, Farias AP, Teodoro AV, Fernandez MF, Dollet M. (2018). Rainfall and Coconut Accession Explain the Composition and Abundance of the Community of Potential Auchenorrhyncha Phytoplasma Vectors in Brazil. Environ Entomol. DOI: 10.1093/ee/nvy010
Taha K, Berraho EB, Dekkiche S, Aurag J, Bena G . (2018). Rhizobium laguerreae is the main nitrogen-fixing symbiont of cultivated lentil (Lens culinaris) in Morocco. Syst Appl Microbiol. 41(2): 113-121. DOI: 10.1016/j.syapm.2017.09.008
Tatis PAD, Corzo MH, Cabezas JCO, Cipagauta AM, Prias MA, Verdier V , Aguirre PC, Carrascal CEL. (2018). The overexpression of RXam1, a cassava gene coding for an RLK confers disease resistance to Xanthomonas axonopodis pv. manihotis. Planta. 247(4): 1031-1042. doi: 10.1007/s00425-018-2863-4.
Tran TT, Doucouré H, Hutin M, Jaimes Niño LM, Szurek B, Cunnac S, Koebnik R. (2018). Efficient enrichment cloning of TAL effector genes from Xanthomonas. MethodX. doi: 10.1016/j.mex.2018.08.014. eCollection 2018.
Tran TT, Perez-Quintero AL, Wonni I, Yu Y, Wang L, Leach JE, Verdier V, Cunnac S , Bogdanove AJ, Koebnik R , Hutin M, Szurek B. (2018). Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice. PLoS Pathog. DOI: 10.1371/journal.ppat.1007092
Zaka A, Grande G, Coronejo T, Quibod IL, Chen CW, Chang SJ, Szurek B , Arif M, Cruz CV, Oliva R. (2018). Natural variations in the promoter of OsSWEET13 and OsSWEET14 expand the range of resistance against Xanthomonas oryzae pv. Oryzae. Plos One. 13(9) : DOI: 10.1371/journal.pone.0203711
