Nos tutelles
Publications 2015
Adler S, Verdeil JL, Conejero G, Zaharia IL, Sarrazin A, Hoareau J, Fock-Bastide I, Noirot M. (2015). Impact of the laurina mutation in Coffea arabica L. on semi-dwarfism, cell number and hormonal profiles in hypocotyls of seedlings growing under daylight. Trees-Structure and Function, 29(4): 1197-1205.
Afolabi O, Amoussa R, Milan B, Gbogbo V, Poulin L, Koebnik R, Szurek B, Silué D. (2015). First report of bacterial leaf blight of rice caused by Xanthomonas oryzae pv. oryzae in Benin. Plant Disease, in press. doi: 10.1094/PDIS-07-15-0821-PDN.
Aït Hamza M, Ferji Z, Ali N, Tavoillot J, Chapuis E , El Oualkadi A, Moukli A, Khadari B, Boubaker H, Lakhtar H, Roussos S, Mateille T, El Mousadik A. (2015). Plant-parasitic nematodes associated with olive tree in southern Morocco. International Journal of Agriculture and Biology, 2015, 17(4):719‒726. DOI:10.17957/IJAB/14.0004·
Albuquerque EVS, Bezerra CA, Romero JV, Arboleda JA, Valencia-Jimenez A., Pimenta LM, Vitorino-Araújo M, Barbosa AEAD, Meneguim AM, Silva MCM, Engler G, de Almeida-Engler J, Fernandez D , Grossi-de-Sa MF . (2015). Seed-specific stable expression of the α-AI1 inhibitor in coffee grains and the in vivo implications for the development of the coffee berry borer. Tropical Plant Biology, DOI 10.1007/s12042-015-9153-0.
Ali N, Tavoillot J, Mateille T, Chapuis E , Besnard G, El Bakkali A, Cantalapiedra-Navarrete C, Liébanas G, Pablo Castillo P, Palomares Rius JEA. (2015). New root-knot nematode Meloidogyne spartelensisn. sp. (Nematoda: Meloidogynidae) in Northern Morocco. European Journal of Plant Pathology. 143(1):25-42.
Bellafiore S , Jougla C, Chapuis E , Besnard G, Suong M, Nguyen Vu P, De Waele D, Gantet P, Ngo Thi X. (2015). Intraspecific variability of the facultative meiotic parthenogenetic root-knot nematode (Meloidogyne graminicola) from rice fields in Vietnam. Comptes rendus Biologies. 338(7). DOI:10.1016/j.crvi.2015.04.002.
Bertrand B , Bardil A, Baraille H, Dussert S, Doulbeau S, Dubois E, Severac D, Dereeper A , Etienne H . (2015). The greater phenotypic homeostasis of the allopolyploid Coffea arabica improved the transcriptional homeostasis over that of both diploid parents. Plant and Cell Physiology. 56:2035-2051.
Beulé T, Agbessi MD, Dussert S, Jaligot E, Guyot R. (2015). Genome-wide analysis of LTR-retrotransposons in oil palm. BMC Genomics. Oct 15;16(1):795. doi: 10.1186/s12864-015-2023-1
Bobadilla Landey R, Cenci A, Bertrand B, Georget F, Dechamp E, Simpson J, Herrera JC, Lashermes P, Etienne H . (2015). Assessment of genetic and epigenetic changes during cell culture ageing in coffee and relations with somaclonal variation.Plant Cell, Tissue & Organ Culture. 3:517-531
Bossa-Castro A, Raghavan C, Delorean EE, VeraCruz CM, Leung H, Mosquera G, Verdier V , Leach JE. (2015). Identifying novel resistance sources for bacterial diseases of rice in West Africa. Phytopathology. 105(Suppl. 4):S4.18.
Bousquet F, Robbins P, Peloquin C, Bonato O. (2015). The PISA grammar decodes diverse Human-Environment Approaches. Global Environment Change. 34: 159-171.
Chaparro C, Gayraud T, de Souza RF, Silva Domingues D, Akaffou S, Laforga Vanzela AL, de Kohcko A, Rigoreau M, Crouzillat D, Hamon S, Hamon P, Guyot R. (2015). Terminal-repeat Retrotransposons with GAG domain (TR-GAG) in plant genomes: A new testimony on the complex world of transposable elements. Genome. Biol Evol. 7(2): 493-504.
Clavijo F, Diedhiou I, Vaissayre V, Brottier L, Acolatse J, Moukouanga D, Crabos A, Auguy F , Franche C, Gherbi H, Champion A, Hocher V, Barker D, Bogusz D, Tisa LS, Svistoonoff S. (2015). The Casuarina NINgene is transcriptionally activated throughout Frankia root infection as well as in response to bacterial diffusible signals. New Phytol. 208: 887-903. doi: 10.1111/nph.13506.
Combes MC, Hueber Y, Dereeper A , Rialle S, Herrera JC, Lashermes P. (2015). Regulatory divergence between parental alleles determines gene expression patterns in hybrids. Genome Biol. Evol. 7(4): 1110-1021.
Coudert Y, Le VAT, Adam H, Bes M, Vignols F, Jouannic S, Guiderdoni E, Gantet P. (2015). Identification of CROWN ROOTLESS1 - regulated genes in rice reveals specific and cnserved elements of post embryonic root formation. New Phytol. 206(1): 243-254.
Czernic P, Gully D, Cartieaux F, Moulin L , Guefrachi I, Patrel D, Pierre O, Fardoux J, Chaintreuil C, Nguyen P, Gressent F, Dasilva C , Poulain J, Wincker P, Rofidal V, Hem S, Barrière Q, Arrighi JF, Mergaert P, Giraud E. (2015). Convergent Evolution of Endosymbiont Differentiation in Dalbergioid and Inverted Repeat-Lacking Clade Legumes Mediated by Nodule-Specific Cysteine-Rich Peptides. Plant Physiol. Oct;169(2):1254-65. doi: 10.1104/pp.15.00584
Dechamp E, Breitler JC , Leroy T, Etienne H. (2015). Coffea arabica L. Methods Mol Biol. 1224:275-91.
Dereeper A, Bocs S, Rouard M, Guignon V, Ravel S, Tranchant-Dubreuil C, Poncet V, Garsmeur O, Lashermes P, Droc G. (2015). The coffee genome hub: a reserouce for coffee genomes. Nucleic Acids Res. Jan 28;43(Database issue):D1028-35. doi: 10.1093/nar/gku1108. Epub 2014 Nov 11.
Dereeper A , Homa F, Andres G, Sempere G, Sarah G, Hueber Y, Dufayard JF, Ruiz M. (2015). SNiPlay3: A web-based application for exploration and large scale analyses of genomic variations. Nucleic Acids Res. Jul 1;43(W1):W295-300.
Dias ES, Hatt C, Hamon S, Hamon P, Rigoreau M, Crouzillat D, Carareto CM, de Kochko A, Guyot R. (2015). Large distribution and high sequence identity of a Copia-type retrotransposon in angiosperm families. Plant Mol Biol. 2015 Sep;89(1-2):83-97. doi: 10.1007/s11103-015-0352-8. Epub 2015 Aug 6. PubMed PMID: 26245353.
Diouf F, Diouf D, Klonowska A , Le Quere A, Bakhaoum N, Fall D, Neyra M, Parrinello H, Diouf M, Ndoye I, Moulin L. (2015). Genetic and genomic diversity studies of Acacia symbionts in Senegal reveal new species of Mesorhizobium with a putative geographical pattern. Plos One. 10(2):
Doucouré H , Auguy F , Tekete C , Hutin M, Baufumé S, Koebnik R, Szurek B , Koita O, Verdier V, Cunnac S. (2015). Engineering Broad Resistance Tailored against Rice Bacterial Leaf Blight in Mali. Phytopathology 105(Suppl. 4):S4.37
Erkes A, Grau J, Reschke M, Streubel J, Morgan RD, Wilson GG, Koebnik R , Boch J. (2015). AnnoTALE - Identification, annotation and classification of transcription activator-like effectors. PeerJ PrePrints3: e1708. doi: 10.7287/peerj.preprints.1350v2.
Fabre S, Gully D, Poitout A, Patrel D, Arrighi JF, Giraud E, Czernic P, Cartieaux F. (2015). The Nod factor-independent nodulation in Aeschynomene evenia required the common plant-microbe symbiotic "toolkit". Plant Physiol., in press. doi: 10.1104/pp.15.01134.
Fernandez D, Petitot AS , Grossi de Sá M , Nguyễn VP, de Almeida-Engler J, Kyndt T. (2015) Recent advances in understanding plant-nematode interactions in monocots. Advances in Botanical Research. 73:189-219.
Graham S, Chapuis E , Meconcelli S, Bonel N, Sartori K, Christophe A, Alda P, David P, Janicke T. (2015). Size-assortative mating in simultaneous hermaphrodites: an experimental test and a meta-analysis. Behavioral Ecology and Sociobiology, 69(11), DOI:10.1007/s00265-015-1999-5.
Hutin M, Perez-Quintero A, Lopez C, Szurek B. (2015). MorTAL Kombat: the stroy of defense against TAL effectors through loss-of susceptibility. Frontiers in Plant Science. 6: 535-535.
Hutin M , Sabot F, Ghesquiere A, Koebnik R, Szurek B. (2015). A knowledge-based molecular screen uncovers a broad spectrum OsSWEET14 resistance allele to bacterial blight from wild rice. Plant J. doi: 10.1111/tpj.13042
Jacobs JM, Pesce C , Lefeuvre P, Koebnik R. (2015). Comparative genomics of a cannabis pathogen reveals insight into the evolution of pathogenicity in Xanthomonas. Frontiers in Plant Science. 6: 431 doi: 10.3389/fpls.2015.00431. eCollection 2015.
Jalloul A., Sayegh M., Champion A., Nicole M. (2015). bacterial blight of cotton. Phytopathologia Mediterranea. 54(1): 3-20.
Janicke T, David P, Chapuis E. (2015). Environment-dependent sexual selection: Bateman's parameters under varying levels of food availability. The American Naturalist. 185 (6), 756-768.
Kone D, Dao S, Tekete C, Doumbia I, Koita O, Abo K, Wicker E, Verdier V. (2015). Confirmation of Xanthomonas axonopodis pv. manihotis Causing Cassava Bacterial Blight in Ivory Coast. Plant Disease,99,10.
Khong GN, Pati PK, Richaud F, Parizot B, Bidizinski P, Mai CD, Bes M, Bourrie I, Meynard D, Beeckman T, Selvaraj MG, Manabu I, Genga AM, Brugidou C , Do VN, Guiderdoni E, Morel JB, Gantet P. (2015). OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice. Plant Physiology. 169(4): 2935-2949
Lima EA, Furlanetto C, Nicole M , Gomes ACMM, AlmeidaMRa, Jorge-Junior A, Correa VR, Salgado SM, Ferrao MAG, Carneiro RMDG. (2015). The multi-reaction of drought-tolerant coffee 'conilon clone 14' to meloidogyne spp. and late hypersensitive-like response in coffea canephora. Phytophatology. 105(6): 805-814.
Lopez-Lima D, Sanchez-Nava P, Carrion G, de los Monteraos AE, Villain l. (2015). Corky-root symptoms for coffee in central Veracruz are linked to the root-knot nematode Meloidogyne paranaensis, a new report for Mexico. European J. of Plant Pathology. 141(3): 623-629.
Meng F, Babujee L, Jacobs JM, Allen C . (2015). Comparative transcriptome analysis reveals cool virulence factors of Ralstonia solanacearumrace 3 biovar 2. PLoS One10: e0139090. doi: 10.1371/journal.pone.0139090.
Munoz Bodnar A, Cruz Gomez LM, Bernal A, Szurek B , Lopez Carrascal CE. (2015). Comparing inoculation methods to evaluate the growth of Xanthomonas axonopodis pv. manihotis on cassa plants. Acta Biologica Colombiana. 20(2): 47-55.
Ndikumana I, Pinel-Galzi A , Mzengeza T, N’chimbi Msolla S, Njau P, Choi Ir, Murori R, Birigimana J, Fargette D, Hébrard E. (2015). First report of Rice yellow mottle virus in rice in Malawi. Plant Disease 99 (6) 899.
Nguyen TD, Lacombe S, Bangratz M , Ta HA, Vinh do N, Gantet P, Brugidou C. (2015). p2 of Rice grassy stunt virus (RGSV) and p6 and p9 of Rice ragged stunt virus (RRSV) isolates from Vietnam exert suppressor activity on the RNA silencing pathway. Virus Genes. 51 :267-275.
Ochola D, Issaka S, Rakotomalala M, Pinel-Galzi A , Ndikumana I, Hubert J, Hébrard E , Séré Y, Tusiime G, Fargette D. (2015). Emergence of rice yellow mottle virus in eastern Uganda: recent and singular interplay between strains in East frica and In Madagascar. Virus Res. 2;195:64-72.
Oludare A, Afolabi O, Sow M, Pinel-Galzi A, Hébrard E, Silué D. (2015) First Report of Rice stripe necrosis virus Infecting Rice in Benin, Plant Disease 99 (5) 735.
Pérez-Quintero AL , Lamy L, Gordon JL, Escalon A, Cunnac S, Szurek B, Gagnevin L . (2015). QueTAL: a suite of tools to classify and compare TAL effectors functionally and phylogenetically. Front. Plant Sci. 6: 545. doi: 10.3389/fpls.2015.00545.
Pesce C , Bolot S, Berthelot E, Bragard C, Cunnac S, Fischer-Le Saux M, Portier P, Arlat M, Gagnevin L , Jacques MA, Noël LD, Carrère S, Koebnik R. (2015). Draft genome sequence of Xanthomonas translucens pv. graminis pathotype strain CFBP 2053. Genome Announc.3: e01174-15. doi: 10.1128/genomeA.01174-15.
Pesce C , Bolot S, Cunnac S , Portier P, Fischer-Le Saux M, Jacques MA, Gagnevin L , Arlat M, Noël LD, Carrère S, Bragard C, Koebnik R. (2015). High-quality draft genome sequence of the Xanthomonas translucens pv. cerealis pathotype strain CFBP 2541. Genome Announc.3: e01574-14. doi: 10.1128/genomeA.01574-14.
Pinel-Galzi A , Traore O, Sere Y, Hebrard E, Fargette D. (2015). The biogeography of viral emergence: rice yellow mottle virus as a case study. Curr. Opin. Virol. 10: 7-13.
Poulin L , Grygiel P, Magne M, Gagnevin L , Rodriguez-R LM, Forero Serna N, Zhao S, El Rafii M, Dao S, Tekete C, Wonni I , Koita O, Pruvost O, Verdier V , Vernière C, Koebnik R. (2015). New multilocus variable-number tandem-repeat analysis tool for surveillance and local epidemiology of bacterial leaf blight and bactérial leaf streak of rice caused by Xanthomonas. Appl Environ Microbiol. 181(2): 688-98.
Roux B, Bolot S, Guy E, Denancé N, Lautier M, Jardinaud MF, Fischer-Le Saux M, Portier P, Jacques MA, Gagnevin L , Pruvost O, Lauber E, Arlat M, Carrère S, Koebnik R , Noël LD. (2015). Genomics and transcriptomics ofXanthomonas campestrisspecies challenge the concept of core type III effectome. BMC Genomics 16: 975. doi: 10.1186/s12864-015-2190-0.
Santos FC, Guyot R , do Valle CB, Chiari L, Techio VH, Heslop-Harrison P, Vanzela AL. (2015). Chromosomal distribution and evolution of abundant retro transposons in plants: gypsy elements in diploid and polyploid Brachiaria forage grasses. Chromosome Res. 2015 Sep 19. [Epub ahead of print] PubMed PMID: 26386563.
Sicard A, Zeddam JL , Yvon M, Michalakis Y, Gutierrez S, Blanc S. (2015). Circulative nonpropagative aphid transmission of nanoviruses: an oversimplified view. J Virol. 89:9719–9726. doi:10.1128/JVI.00780-15.
Tekete C , Doucoure H , Dembele M, Doumbia M, Dao S, Dagno K, Sarra S, Cunnac S , Koita O, Verdier V. (2015). Identifying Xanthomonas oryzae pv.oryzae strains and adapted sources of resistance among rice breeding lines in Mali . Phytopathology 105(Suppl. 4):S4.136.
Tran TT, Nga NV, Ngan PT, Hong NT, Szurek B , Koebnik R , Ham LH, Cuong HV, Cunnac S . (2015). Confirmation of bacterial leaf streak of rice caused by Xanthomonas oryzae pv. oryzicola in Vietnam. Plant Disease. 99 (12), p. 1853-1853. http://dx.doi.org/10.1094/pdis-03-15-0289-pdn
Triplett LR, Verdier V , Campillo T, Van Malderghem C, Cleenwerck I, Maes M, Deblais L, Corral R, Koita O, Cottyn B, Leach JE. (2015). Characterization of a novel clade of Xanthomonas isolated from rice leaves in Mali and proposal of Xanthomonas maliensis sp. nov. Antonie Van Leeuwenhoek. 107(4): 869-881.
Van der Vossen H, Bertrand B , Charrier A. (2015). Next generation variety development for sustainable production of arabica coffee (Coffea arabica L.): A review.Euphytica, 204 (2) : p. 243-256.
VanBuren R, Zeng F, Chen C, Zhang J, Wai CM, Han J, Aryal R, Gschwend AR, Wang J, Na JK, Huang L, Zhang L, Miao W, Gou J, Arro J, Guyot R , Moore RC, Wang ML, Zee F, Charlesworth D, Moore PH, Yu Q, Ming R. (2015). Origin and domestication of papaya Yh chromosome. Genome Res. 2015 Apr;25(4):524-33. doi: 10.1101/gr.183905.114. Epub 2015 Mar 11. PubMed PMID: 25762551; PubMed Central PMCID: PMC4381524.
Vancheva T , Bogatzevska N, Moncheva P, Lefeuvre P, Koebnik R. (2015). Draft genome sequences of two Xanthomonas vesicatoria strains from the Balkan Peninsula. Genome Announc. 12;3(1). pii: e01558-14. doi: 10.1128/genomeA.01558-14.
Vancheva T , Lefeuvre P, Bogatzevska N, Moncheva P, Koebnik R. (2015). Draft genome sequences of two Xanthomonas euvesicatoria strains from the Balkan Peninsula. Genome Announc. 5;3(1). pii: e01528-14. doi: 10.1128/genomeA.01528-14.
Wonni I , Djedatin G, Ouédraogo L, Verdier V. (2015) Evaluation of Rice Germplasm against Bacterial Leaf Streak Disease Reveals Sources of Resistance in African Varieties. J Plant Pathol Microb 6: 312. doi:10.4172/2157-7471.1000312
Wonni I , Ouedraogo L, Dao S, Tekete C , Koita O, Taghouti G, Portier P, Szurek B, Verdier V . (2015). First report of cassava bacterial blight caused by Xanthomonas axonopodis pv. manihotis in Burkina Faso. Plant Disease. 99: 551. doi: PDIS-03-14-0302-PDN.
Wonni I , Kone D, Koita O, Dagno K, Verdier V. (2015). Cassava Bacterial blight: A main biological constraint for cassava production in West-Africa. Phytopathology 105(Suppl. 4):S4.149.
