Nos tutelles
Publications 2019
Ahmed D, Comte A, Curk F, Costantino G, Luro F, Dereeper A , Mournet P, Froelicher Y, Ollitrault P. (2019). Genotyping by sequencing can reveal the complex mosaic genomes in gene pools resulting from reticulate evolution: a case study in diploid and polyploid citrus. Ann. Bot. DOI: 10.1093/aob/mcz029
Almeida RPP, De La Fuente L, Koebnik R , Lopes JRS, Parnell, S, Scherm H. (2019). Addressing the New Global Threat of Xylella fastidiosa. Phytopathology. 109(2): 172-174. DOI: 10.1094/PHYTO-12-18-0488-FI
Awada R, Campa C , Gibault E, Dechamp E, Georget F , Lepelley M, Abdallah C, Erban A, Martinez-Seidel F, Kopka J, Leran S , Conojero G, Verdeil JL, Crouzillat D, Breton D, Bertrand B, Etienne H. (2019). Unravelling the Metabolic and Hormonal Machinery During Key Steps of Somatic Embryogenesis: A Case Study in Coffee. int J Mol Sci. DOI: 10.3390/ijms20194665
Bamogo PKA, Brugidou C, S
érémé D, Tiendrébéogo F, Djigma FW, Simpore J, Lacombe S.
(2019) Virus-based pharmaceutical production in plants: an opportunity to reduce health problems in Africa. Virol J. 16:167. DOI:
10.1186/s12985-019-1263-0
Bamogo PKA, Brugidou C , Tiendrébéogo F, Sérémé D Djigma FW, Simpore J, Lacombe S . (2019) Development of a rice yellow mottle virus amplicon biotechnological tool for the production of high value proteins in rice. African Journal of Biotechnology. DOI: 10.5897/AJB2019.17000
Besnard G, Thi-Phan N, Ho-Bich H, Dereeper A , Trang Nguyen H, Queneherve P, Aribi J, Bellafiore S . (2019). On the Close Relatedness of Two Rice-Parasitic Root-Knot Nematode Species and the Recent Expansion of Meloidogyne graminicola in Southeast Asia. Genes (Basel). DOI: 10.3390/genes10020175
Bresso E, Fernandez D , Amora DX, Noel P, Petitot A S, De Sa ML, Albuquerque EVS, Danchin EGJ, Maigret B, Martins NF. (2019). A Chemosensory GPCR as a Potential Target to Control the Root-Knot Nematode Meloidogyne incognita Parasitism in Plants. Molecules. doi: 10.3390/molecules24203798.
Caradonia F, Francia E, Morcia C, Ghizzoni R, Moulin L , Terzi V, Ronga D. (2019). Arbuscular Mycorrhizal Fungi and Plant Growth Promoting Rhizobacteria Avoid Processing Tomato Leaf Damage during Chilling Stress. Agronomy Basel. 9(6). DOI: 10.3390/agronomy9060299.
Carvajal-Yepes M, Cardwell K, Nelson A, Garrett KA, Giovani B, Saunders DGO, Kamoun S, Legg JP, Verdier V , Lessel J, Neher RA, Day R, Pardey P, Gullino ML, Records AR, Bextine B, Leach JE, Staiger S, Tohme J. (2019). A global surveillance system for crop diseases. Science, 364 (6447), 1237-1239. doi:10.1126/science.aaw1572
Da Silva FG, Dos Passos EM, Diniz LEC, Fernandes MF, Bartlett CR, Dollet M , Teodoro AV. (2019). Relative contribution of rainfall and coconut hybrids to the abundance and composition of the Auchenorrhyncha community as potential vectors of phytoplasmas in the state of Sergipe, Brazil. Agricultural and Forest Entomology. 21(2): 190-198.
Daubech B, Poinsot V, Klonowska A , Capela D, Chaintreuil C, Moulin L , Marchetti M, Masson-Boivin C. (2019). noeM, a New Nodulation Gene Involved in the Biosynthesis of Nod Factors with an Open-Chain Oxidized Terminal Residue and in the Symbiosis with Mimosa pudica. MPMI. DOI: 10.1094/MPMI-06-19-0168-R
de Lajudie PM, Andrews M, Ardley J, Eardly B, jumas-Bilak E, Kuzmanovic N, Lassalle F, Kindstrom K, Mhamdi R, Martinez-Romero E, Moulin L , Mousavi SA, Nesme X, Peix A, Pulawska J, Steenkamp E, Stepkowski T, Tian CF, Vinuesa P, Wei G, Willems A, Zilli J, Young P. (2019). Minimal standards for the description of new genera and species of rhizobia and agrobacteria. Int J Syst Evol Microbiol. DOI: 0.1099/ijsem.0.003426
Dos Santos TB, Soares JDM, Lima JE, Silva JC, Ivamoto ST, Baba VY, Souza SGH, Lorenzetti APR, Paschoal AR, Meda AR, Nishiyama Júnior MY, de Oliveira ÚC, Mokochinski JB, Guyot R , Junqueira-de-Azevedo ILM, Figueira AVO, Mazzafera P, Júnior OR, Vieira LGE, Pereira LFP, Domingues DS. (2019). An integrated analysis of mRNA and sRNA transcriptional profiles in Coffea arabica L. roots: insights on nitrogen starvation responses. Funct Integr Genomics. 19(1): 151-169. doi: 10.1007/s10142-018-0634-8.
Duarte KE, de Souza WR, Santiago TR, Sampaio AP, Ribeiro AP, Cotta MG, da Cunha BADB, Marraccini PRR , Kobayashi AK, Molinari HBC. (2019). Identification and characterization of core abscisic acid (ABA) signaling components and their gene expression profile in response to abiotic stresses in Setaria viridis. Sci Rep. doi: 10.1038/s41598-019-40623-5.
Eom JS, Luo DP, Atienza-Grande G, Yang J, Ji CH, Luu VT, Huguet-Tapia JC, Char SN, Liu B, Nguyen H, Schmidt SM, Szurek B , Cruz CV, White FF, Oliva R, Yang B, Frommer WB. (2019). Diagnostic kit for rice blight resistance. Nature Biotechnology. 37(11). DOI: 10.1038/s41587-019-0268-y.
Flores C, Zarate C, Triplett, L, Mallot-Lebon V, Moufid Y, Kante M, Bragard C, Verdier V, Gagnevin L, Szurek B , Robene I. (2019). Development of a duplex-PCR for differential diagnosis of Xanthomonas phaseoli pv. manihotis and Xanthomonas cassavae in cassava (Manihot esculenta). Physiological and Molecular Plant Pathology. 105: 34-46. DOI: 10.1016/j.pmpp.2018.07.005
Georget F , Marie L, Alpizar E, Courtel P, Bordeaux M, Hidalgo JM, Marraccini P, Breitler JC, Déchamp E, Poncon C, Etienne H, Bertrand B . (2019) Starmaya: The First Arabica F1 Coffee Hybrid Produced Using Genetic Male Sterility. Front. Plant Sci. 10:1344. doi: 10.3389/fpls.2019.01344
Gómez-Santos N, Glatter T, Koebnik R, Swiatek-Polatynska MA, Sogaard-Andersen L. (2019). A TonB-dependent transporter is required for secretion of protease PopC across the bacterial outer membrane. Nature Communications. doi: 10.1038/s41467-019-09366-9.
Grossi-de-Sa M, Petitot AS , Xavier DA, Sa MEL, Mezzalira I, Beneventi MA, Martins NF, Baimey HK, Albuquerque EVS, Grossi-de-Sa MF, Fernandez D. (2019). Rice susceptibility to root-knot nematodes is enhanced by the Meloidogyne incognita MSP18 effector gene. Planta. DOI: 10.1007/s00425-019-03205-3
Guyeux C, Charr JC, Tran HTM, Furtado A, Henry RJ, Crouzillat D, Guyot R , Hamon P. (2019. Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species. Plos One? 14(6). DOI: 10.1371/journal.pone.0216347
Juanillas V, Dereeper A , Beaume N, Droc G, Dizon J, Mendoza JR, Perdon JP, Mansueto L, Triplett L, Lang J, Zhou G, Ratharanjan K, Plale B, Haga J, Leach JE, Ruiz M, Thomason M, Alexandrov N, Larmande P, Kretzschmar T, Mauleon R.P. (2019). Rice Galaxy: an open resource for plant science. DOI: 10.1093/gigascience/giz028
Karim S, McNally RR, Nasaruddin AS, DeReeper A , Mauleon RP, Charkowski AO, Leach JE, Ben-Hur A, Triplett LR. (2019). Development of the Automated Primer Design Workflow Uniqprimer and Diagnostic Primers for the Broad-Host-Range Plant Pathogen Dickeya dianthicola. Plant Dis. DOI: 10.1094/PDIS-10-18-1819-RE
Khenfous-Djebari B, Kerkoud M, Fischer-Le Saux M, Benhassine T, Bouznad Z, Koebnik R , Bragard C. (2019). Isolation of atypical wheat-associated xanthomonads in Algeria. Phytopathologia Mediterranea, 58 (3), 497-506.
Khojasteh M, Taghavi SM, Khodaygan P, Hamzehzarghani H, Chen G, Bragard C, Koebnik R , Osdaghi E. (2019). Molecular Typing Reveals High Genetic Diversity of Xanthomonas translucens Infecting Small-Grain Cereals in Iran. Appl. Environ. Microbiol. doi: 10.1128/AEM.01518-19.
King E, Wallner A, Rimbault I , Barrachina C, Klonowska A, Moulin A, Czernic P. (2019). Monitoring of Rice Transcriptional Responses to Contrasted Colonizing Patterns of Phytobeneficial Burkholderia s.l. Reveals a Temporal Shift in JA Systemic Response. Frontiers in Plant Science 10:1141. doi: 10.3389/fpls.2019.01141
Kini K, Dossa R, Dossou B, Mariko M, Koebnik R , Silué D. (2019). A semi-selective medium to isolate and identify bacteria of the genus Pantoea. J. Gen. Plant Pathol. 85(6): 424-427. doi: 10.1007/s10327-019-00862-w.
Klass TL, Long JJ, Summers JA, Roman-Reyna V, Koebnik R , Jacobs JM, Peduto Hand, F. (2019). First report of bacterial blight of peony caused by Xanthomonas hortorum in Ohio. Plant Disease. DOI: 10.1094/PDIS-05-19-1123-PDN
Lang JM, Pérez-Quintero AL, Koebnik R , DuCharme E, Sarra S, Doucoure H, Keita I, Ziegle J, Jacobs JM, Oliva R, Koita O, Szurek B, Verdier V and Leach JE (2019) A Pathovar of Xanthomonas oryzae Infecting Wild Grasses Provides Insight Into the Evolution of Pathogenicity in Rice Agroecosystems. Front. Plant Sci. 10:507. doi: 10.3389/fpls.2019.00507
Lecorre F, Lai-Kee-Him J, Blanc S, Zeddam JL , Trapani S, Bron P. (2019). The cryo-electron microscopy structure of Broad Bean Stain Virus suggests a common capsid assembly mechanism among comoviruses. Virology. DOI: 10.1016/j.virol.2019.02.009
Lorenzo M. E., Bao L., Mendez L., Grille G., Bonato O, Basso C. (2019). Effect of two oviposition feeding substrates on Orius insidiosus and Orius tristicolor (Hemiptera : Anthocoridae). Florida Entomologist, 102 (2), 395-402. doi:10.1653/024.102.0216
Mangel N, Fudge JB, Li KT, Wu TY, Tohge T, Fernie AR, Szurek B , Fitzpatrick TB, Gruissem W, Vanderschuren H. (2019). Enhancement of vitamin B6 levels in rice expressing Arabidopsis vitamin B6 biosynthesis de novo genes. Plant J. DOI: 10.1111/tpj.14379
Mattos VD, Mulet K, Cares JE, Gomes CB, Fernandez D , de Sa MFG, Carneiro RMDG, Castagnone-Sereno P. (2019). Development of Diagnostic SCAR Markers for Meloidogyne graminicola, M-oryzae, and M-salasi Associated with Irrigated Rice Fields in Americas. Plant Disease. 103(1): 83-88. DOI: 10.1094/PDIS-12-17-2015-RE
Medina-Sauza RM, Alvarez-Jimenez M, Delhal A, Reverchon F, Blouin M, Guerrero-Analco JA, Cerdan CR, Guevara R, Villain L , Barois I. (2019). Earthworms Building Up Soil Microbiota, a Review. Frontiers in Environmental Science, 7. doi:10.3389/fenvs.2019.00081
Nakato V, Fuentes Rojas JL, Verniere C, Blondin L, Mahuku G, Wicker E . (2019). A new Multi Locus Variable Number of Tandem Repeat Analysis Scheme for epidemiological surveillance of Xanthomonas vasicola pv. musacearum, the plant pathogen causing bacterial wilt on banana and enset. PLoS One. DOI: 10.1371/journal.pone.0215090
Oliva R, Ji CH, Atienza-Grande G, Huguet-Tapia JC, Perez-Quintero A, Li T, Eom JS, Li CH, Nguyen H, Liu B, Auguy F , Sciallano C, Luu T, Dossa GS, Cunnac S, Schmidt SM, Slamet-Loedin IH, Cruz CV, Szurek B , Frommer WB, White FF, Yang B. (2019). Broad-spectrum resistance to bacterial blight in rice using genome editing. Nature Biotechnology. 37(11). DOI: 10.1038/s41587-019-0267-z.
Perez-Quintero AL, Szurek B. (2019). A Decade Decoded: Spies and Hackers in the History of TAL Effectors Research. Annu. Rev. Phothopathol. doi: 10.1146/annurev-phyto-082718-100026
Prado GS, Bamogo PKA, de Abreu JAC, Gillet FX, dos Santos VO, Silva MCM, Brizard JP, Bemquerer MP, Bangratz M, Brugidou C , Sérémé D, Grossi-de-Sa MF, Lacombe S. (2019). Nicotiana benthamiana is a suitable transient system for high-level expression of an active inhibitor of cotton boll weevil α-amylase. BMC Biotechnol. doi: 10.1186/s12896-019-0507-9.
Rache L, Blondin L, Flores C, Trujillo C, Szurek B, Restrepo S, Koebnik R, Bernal A, Vernière C. (2019). An Optimized Microsatellite Scheme for Assessing Populations of Xanthomonas phaseoli pv. manihotis. Phytopathology. DOI: 10.1094/PHYTO-06-18-0210-R
Rakotomalala M, Abera BB, Rakotoarisoa J, Alemu D, Hebrard E, Pinel-Galzi A, Fargette D. (2019). Complete Genome Sequences of Rice Yellow Mottle Virus Isolates from the Federal Democratic Republic of Ethiopia. Microbiology Resource Announcements. 8(30). DOI: 10.1128/MRA.00589-19
Silva FG, Passos EM, Diniz LEC, Teodoro AV, Talamini V, Fernandez MF, Dollet M . (2019). Occurrence in Brazil of Haplaxius crudus (Hemiptera: Cixiidae), Vector of Coconut Lethal Yellowing. Neotrop Entomol. DOI: 10.1007/s13744-018-0663-y
Soewarto J, Hamelin C, Bocs S, Mournet P, Vignes H, Berger A, Armero A, Martin G, Dereeper A , Sarah G, Carriconde F, Maggia L. (2019). Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust (Austropuccinia psidii). Date in Brief. 22 : 794-811. DOI: 10.1016/j.dib.2018.12.080
Suong M, Chapuis E , Leng V, Tivet F, De Waele D, Nguyễn Thị H, Bellafiore S. (2019). Impact of a conservation agriculture system on soil characteristics, rice yield, and root- parasitic nematodes in a Cambodian lowland rice field. Journal of Nematology (2019) 51: 1-15; doi:10.21307/jofnem-2019-085.
Tibiri EB, K. Somé, Pita JS, Tiendrébéogo F, Bangratz M , Néya JB, Brugidou C , Barro N. (2019). Effects of Sweet Potato Feathery Mottle Virus, Sweet Potato Chlorotic Stunt Virus and their co-infection on sweetpotato yield in Burkina Faso. Open Agriculture 4: 758-766. /doi.org/10.1515/opag-2019-0076
Tibiri EB, Tiendrébéogo F, Pita JS, Somé K, Bangratz M, Néya JB, Brugidou C , Barro N. (2019). Molecular and biological features of sweet potato leaf curl virus (SPLCV) on sweetpotato in Burkina Faso. Acta Scientific Microbiology 2.10 : 170-177
To HTM, Nguyen, Dang NTM, Nguyen NH, Bui TX, Lavarenne J, Phung NTP, Gantet P, Lebrun M, Bellafiore S , Champion A. (2019). Unraveling the Genetic Elements Involved in Shoot and Root Growth Regulation by Jasmonate in Rice Using a Genome-Wide Association Study. Rice. 12(1): DOI: 10.1186/s12284-019-0327-5
Toniutti L, Breitler JC, Guittin C, Doulbeau S, Etienne H, Campa C , Lambot C, Herrera Pinilla JC, Bertrand B . (2019). An Altered Circadian Clock Coupled with a Higher Photosynthesis Efficiency Could Explain the Better Agronomic Performance of a New Coffee Clone When Compared with a Standard Variety. Int J Mol Sci. DOI: 10.3390/ijms20030736
Torres LF, Reichel T, Dechamp E , De Aquino SO, Duarte KE, Alves GSC, Silva AT, Cotta MG, Costa TS, Diniz LEC, Breitler JC , Collin M, Paiva LV, Andrade AC, Etienne H, Marraccini P. (2019). Expression of DREB-Like Genes in Coffea canephora and C. arabica Subjected to Various Types of Abiotic Stress. Topical Plant Biology. 12(2) : 98-116. DOI: 10.1007/s12042-019-09223-5 .
Trang Nguyen Hieu, Thi Mai Huong, Lebrun M, Bellafiore S , Champion A. (2019). Jasmonates-the Master Regulator of Rice Development, Adaptation and Defense. Plants. 8(9): DOI:10.3390/plants8090339
Vincent B, Juillot F, Fritsch E, Klonowska A , Gerbert N, Acherar S, Grangeteau C, Hannibal L, Galiana A, Ducousso M, Jourand P. (2019). A leguminous species exploiting alpha- and beta-rhizobia for adaptation to ultramafic and volcano-sedimentary soils: an endemic Acacia spirorbis model from New Caledonia. FEMS Microbiol. Ecol. DOI: 10.1093/femsec/fiz099
Wallner A, King E, Ngonkeu ELM, Moulin L, Bena G. (2019). Genomic analyses of Burkholderia cenocepacia reveal multiple species with differential host-adaptation to plants and humans. BMC Genomics 20, 803 (2019) doi:10.1186/s12864-019-6186-z
Wu D, von Roepenack-Lahaye E, Buntru M, de Lange O, Schandry N, Perez-Quintero AL, Weinberg Z, Lowe-Power TM, Szurek B
, Michael AJ, Allen C, Schillberg S, Lahaye T. (2019). A Plant Pathogen Type III Effector Protein Subverts Translational Regulation to Boost Host Polyamine Levels. Cell Host Microbe. DOI:
10.1016/j.chom.2019.09.014
