Nos tutelles
Publications 2016
Afolabi O., Milan B., Amoussa R., Oludare A., Gbogbo V., Poulin L., Szurek B., Koebnik R. , Silué D. (2016). First report of bacterial leaf blight of rice caused by Xanthomonas oryzae pv. oryzae in Benin. Plant Dis 100:515. Link
Ali N, Tavoillot J, Chapuis E , Mateille T. (2016). Trend to explain the distribution of root-knot nematodes Meloidogynes spp. associated with olive trees in Morocco. Agriculture Ecosystems & Environment. 225: 22-32.
Auguy F , Fahr M, Moulin P, El Mzibri M, Smouni A, Filali-Maltouf A, Béna G , Doumas P. (2016). Transcriptome Changes in Hirschfeldia incana in Response to Lead Exposure. Front Plant Sci. 6: 1231. doi: 10.3389/fpls.2015.01231
Bontemps C, Rogel MA, Wiechmann A, Mussabekova A, Moody S, Simon MF, Moulin L , Elliott GN, Lacercat-Didier L., Dasilva C , Grether R, Camargo-Ricalde SL, Chen WM, Sprent JI, Martinez-Romero E, Young JPW, James EK. (2016). Endemic Mimosa species from Mexico prefer alphaproteobacterial rhizobial symbionts. New Phytologist, 2016, 209 (1), p. 319-333. http://dx.doi.org/10.1111/nph.13573
Breitler JC, Campa C, Georget F, Bertrand B, Etienne H. (2016). A single-step method for RNA isolation at field level in tropical crops. Scientific Reports. doi: 10.1038/srep38368
Chapuis E , Besnard G, Andrianasetra S, Rakotomalala M, Nguyen HT, Bellafiore S. (2016). First report of the root-knot nematode (Meloidogyne graminicola) in Madagascar rice fileds. Australian plant Dis. Notes. 11: 32
Dall'Agnol RF, Plotegher F, Souza RC, Mendes IC, Bueno Dos Reis Junior F, Béna G, Moulin L , Hungria M. (2016). Paraburkholderia nodosa is the main N2-fixing species trapped by promiscuous common bean (Phaseolus vulgaris L.) in the Brazilian "Cerradao". FEMS Microbiol Ecol. 2016 May 18. pii: fiw108. [Epub ahead of print]
Djedatin G, Ndjiondjop MN, Sanni A, Lorieux M, Verdier V , Ghesquiere A. (2016). Identification of novel major and minor QTLs associated with Xanthomonas oryzae pv. oryzae (African strains) resistance in rice (Oryza sativa L.). Rice. 9 (1): 18. DOI: 10.1186/s12284-016-0090-9
Etienne H, Bertrand B, Dechamp E , Maurel P, Georget F, Guyot R, Breitler JC (2016) Are genetic and epigenetic instabilities of plant embryogenic cells a fatality? The experience of coffee somatic embryogenesis. Human Genet Embryol. 6:136. http://dx.doi.org/10.4172/2161-0436.1000136
Garavito A, Montagnon C, Guyot R, Bertrand B. (2016). Identification by the DArTseq method of the genetic origin of the Coffea canephora cultivated in Vietnam and Mexico. BMC Plant Biol. 2016 Nov 4;16(1):242.
Grau J, Reschke M, Erkes A, Streubel J, Morgan RD, Wilson GG, Koebnik R , Boch J. (2016). AnnoTALE: bioinformatics tools for identification, annotation, and nomenclature of TALEs from Xanthomonas genomic sequences. Sci Rep. 6: 21077. doi: 10.1038/srep21077
Guentas L, Gensous S, Cavaloc Y, Ducousso M, Amir H, de Ledenon BD, Moulin L , Jourand P. (2016). Burkholderia novacaledonia sp. nov. and B. ultramafica sp. nov. isolated from roots of Costularia spp. pioneer plants of ultramafic soils in New caledonia. Syst Appl Microbiol. 2016 May;39(3):151-9. doi: 10.1016/j.syapm.2016.03.008. Epub 2016 Mar 24.
Guinard J, Vinatzer BA, Poussier S, Lefeuvre P, Wicker E. (2016). Draft Genome Sequences of Nine Strains of Ralstonia solanacearum Differing in Virulence to Eggplant (Solanum melongena). Genome Announcement. 4(1):e01415-15. doi: 10.1128/genomeA.01415-15.
Guyot R , Darre T., Dupeyron M., Kochko de A, Hamon S, Couturon E, Crouzillat D, Rigoreau M, Rakotomalala JJ, Raharimalala NE, Akaffou S, Hamon P. (2016). Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories. Molecular Genetics and Genomics. 291 (5), p. 1979-1990. http://dx.doi.org/10.1007/s00438-016-1235-7
Huerta A, Delorean E, Bossa-Castro A, Raghavan C, Corral R, Verdier V , Leung H, Leach J. (2016). Quantitative resistance loci identified for the bacterial blight causative agent, Xanthomonas oryzae pv. oryzae. Phytopathology. 106 (12), p. 81-81.
Hutin M, Césari S, Chalvon V, Michel C,Tran TT, Boch J, Koebnik R, Szurek B , Kroj T. (2016). Ectopic activation of the rice NLR heteropair RGA4/RGA5 confers resistance to bacterial blight and bacterial leaf streak diseases. Plant J. 88 (1): 43-55. doi: 10.1111/tpj.13231.
Jacques M.A., Arlat M., Boulanger A., Boureau T., Carrère S., Cesbron S., Chen N.W.G., Cociancich S., Darrasse A., Denancé N., Fischer-Le Saux M., Gagnevin L., Koebnik R. , Lauber E., Noël L.D., Pieretti I., Portier P., Pruvost O., Rieux A., Robène I., Royer M., Szurek B., Verdier V. , Vernière C. 2016. Using ecology, physiology and genomics to understand host specificity in Xanthomonas : French Network on Xanthomonads (FNX). Annu. Rev. Phytopathol. 54: 163-187.
Janicke T, Chapuis E. (2016). Condition dependence of male and female reproductive success: insights from a simultaneous hermaphrodite. Ecology and evolution. 6(3): 830-841.
Lasherme P, Hueber Y, Combes MC, Severac D, Dereeper A. (2016). Inter-genomic DNA Exchanges and Homeologous Gene Silencing Shaped the Nascent Allopolyploid Coffee Genome (Coffea arabica L.). G3 (Bethesda). 2016 Sep 8;6(9):2937-48. doi: 10.1534/g3.116.030858.
Lorenzo E, Grille G, Basso C, Bonato O. (2016). Host preferences and biotic potential of Trialeurodes vaporariorum and Bemisia tabaci (Hemiptera: Aleyrodidae) in tomato and pepper. Arthropod-Plant Interactions. DOI 10.1007/s11829-016-9434-z
Lowe-Power TM, Jacobs JM , Ailloud F, Fochs B, Prior P, Allen C. (2016). Degradation of the Plant Defense Signal Salicylic Acid Protects Ralstonia solanacearum from Toxicity and Enhances Virulence on Tobacco. Mbio, 7 (3), DOI: 10.1128/mBio.00656-16
Ming R, Wai CM, Guyot R. (2016). Pineapple Genome: A reference for monocots and CAM photosynthesis. Trends Genet. DOI: 10.1016/j.tig.2016.08.008
Nicolas SD, Peros JP, Lacombe T, Launay A, Le Paslier MC, Berard A, Mangin B, Valiere S, Martins F, Le Cunff L. Laucou V, Bacilieri R, Dereeper A , Chatelet P, This P, Doligez A. (2016). Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies. BMC Plant Biology. 16(74): DOI: 10.1186/s12870-016-0754-z
Noirot M , Charrier A, Stoffelen P, Anthony F. (2016). Reproductive isolation, gene flow and speciation in the former Coffea subgenus: A review. Trees-Structure and Function. 30(3): 597-608.
Petitot AS , Dereeper A, Agbessi M, Da Silva C, Guy J, Ardisson M, Fernandez D. (2016). Dual RNA-seq reveals Meloidogyne graminicola transcriptome and candidate effectors during the interaction with rice plants. Molecular Plant Pathology. 17(6): 860-874.
Pinel-Galzi A , Dubreuil-Tranchant C, Hébrard E , Mariac C, Ghesquière A, Albar L. (2016). Mutations in Rice yellow mottle virus polyprotein P2a involved in RYMV2 gene resistance breakdown. Frontiers in Plant Science, 7: 1779.DOI: 10.3389/fpls.2016.01779
Pulchérie Kondombo-Barro C, Deu M, Sagnard F, Martin G, Chapuis E , vom Brocke K, Letourmy P, Zongo JD, Chantereau J. (2016). Patterns of genetic structure and phenotypic diversity in sorghum landraces in relation to farmers' management in Burkina Faso. International Journal of Biological and Chemical Sciences, 2016, 10(4): 1747-1764.
Quibod IL, Perez-Quintero A, Booher NJ, Dossa GS, Grande G, Szurek B , Cruz CV, Bogdanove AJ, Oliva R. (2016). Effector diversification contributes to Xanthomonas oryzae pv. oryzae phenotypic adaptation in a semi-isolated environment. Scientific Reports - Nature, 6, p. art. 34137 [11 p.]. http://dx.doi.org/10.1038/srep34137
Robène I, Bolot S, Pruvost O, Arlat M, Noël LD, Carrère S, Jacques MA, Koebnik R, Gagnevin L. (2016). High-quality draft genome sequences of two Xanthomonas pathotype strains infecting aroid plants. Genome Announc. 2016 Sep 1;4(5). pii: e00902-16. doi: 10.1128/genomeA.00902-16.
Rocha DM, Marques A, Andrade CG, Guyot R , Pedrosa-Harand A, Houben A, Bennetzen JL, Vanzela AL. (2016). Developmental programmed cell death during asymmetric microsporogenesis in holocentric species of Rhynchospora (Cyperaceae). J Exp Bot. 67 (18): 5391-5401.
Roncal J, Guyot R , Hamon P, Crouzillat D, Rigoreau M, Konan ON, Rakotomalala JJ, Nowak MD, Davis AP, de Kochko A. (2016). Active transposable elements recover species boundaries and geographic structure in Madagascan coffee species. Molecular Genetics and Genomics. 291(1) : 155-168
Roy L., Bon MC, Cesarini C, Serin J, Bonato O. (2016). Pinpointing the level of isolation between two cryptic species sharing the same microhabitat. A case study with a scarabaeid species complex. Zoologica Cripta, doi:10.1111/zsc.12166
Sakrouhi I, Belfquih M, Sbabou L, Moulin P, Béna G , Filali Maltouf A, Le Quere A. (2016). Recovery of symbiotic nitrogen fixing acacia rhizobia from Merzouga Desert sand dunes in South East Morocco - Identification of a probable new species of Ensifer adapted to stressed environments. Systematic and Applied Microbiology. doi:10.1016/j.syapm.2016.01.001
Sbabou L, Regragui A, Filali-Maltouf A, Ater M, Béna G. (2016). Local genetic structure and worldwide phylogenetic position of symbiotic Rhizobium leguminosarum strains associated with a traditional cultivated crop, Vicia ervilia, from Northern Morocco. Systematic and Applied Microbiology, 2016, 39 (6), p. 409-417. http://dx.doi.org/10.1016/j.syapm.2016.06.005
Sempéré G, Philippe F, Dereeper A , Ruiz M, Sarah G, Larmande P. (2016). Gigwa-genotype investigator for genome-wide analyses. Gigasciences. Jun 6;5:25. doi: 10.1186/s13742-016-0131-8.
Tollenaere C , Susi H, Laine AL. (2016). Evolutionary and Epidemiological Implications of Multiple Infection in Plants. Trends Plant Sci. doi: 10.1016/j.tplants.2015.10.014.
Triplett LR, Cohen SP, Heffelfinger C, Schmidt CL, Huerta A, Tekete C, Verdier V , Bogdanove AJ, Leach JE. (2016). A resistance locus in the American heirloom rice variety Carolina Gold Select is triggered by TAL effectors with diverse predicted targets and is effective against African strains ofXanthomonas oryzaepv.oryzicola. Plant J. 87 (5): 472-483. doi: 10.1111/tpj.13212.
Wonni I, Hutin M, Ouédrago L, Somda I, Verdier V , Szurek B. (2016) Evaluation of Elite Rice Varieties Unmasks New Sources of Bacterial Blight and Leaf Streak Resistance for Africa. J Rice Res 4: 162. doi:10.4172/2375-4338.1000162
